Photo: Emi Takahata

Mysterious Underwater Ruins

Explore the Unexplained in Yonaguni

Photo: Emi Takahata
Emi Takahata   - 11分钟阅读时间

Are you an adventure-seeker with a passion for history and diving? Then get ready to explore one of the world's most mysterious underwater sites—Yonaguni!

Diayatei East, one of the popular dive sites on Yonaguni Island, renowned for its dramatic underwater terrain. Situated on the island’s southern side, it’s surrounded by white sands.
Diayatei East, one of the popular dive sites on Yonaguni Island, renowned for its dramatic underwater terrain. Situated on the island’s southern side, it’s surrounded by white sands.

🔍 I filmed the clips while diving! Watch my video to uncover the mystery:

This area is known as the Main Terrace of the Yonaguni Submarine Ruins. The monolith is said to measure approximately 290 meters long, 120 meters wide, and 26 meters high. Its appearance and scale are often compared to Shuri Castle in Naha, on Okinawa’s main island.
This area is known as the Main Terrace of the Yonaguni Submarine Ruins. The monolith is said to measure approximately 290 meters long, 120 meters wide, and 26 meters high. Its appearance and scale are often compared to Shuri Castle in Naha, on Okinawa’s main island.

Yonaguni is located in the westernmost region of Japan’s Okinawa island chain. The island offers not only breathtaking natural beauty but also a deep sense of mystery. Some divers and professors believe the structures are natural, shaped by erosion, while others argue they are man-made, possibly from an ancient civilization. To me, it was difficult to judge one or the other. When I saw some of the spots, they could have been formed naturally and vice versa. It's hard to believe such a giant turtle monument could have been created naturally. Features like step-like formations and carvings fuel the theory of human construction, but the true origins remain uncertain.

Professor Kimura Masaaki with the University of Ryukyu has suggested that the site may date back thousands of years, perhaps built by older civilizations. However, many divers and scientists disagree, proposing that the monument is a product of natural forces rather than human hands.

Could these submerged structures be the remains of an ancient civilization, or are they simply natural formations, shaped by time and the ocean's currents? The debate has reached global audiences, with the BBC covering Yonaguni’s mystery in 2021. You can read more about it here.

This spot is known as “Two-Layer Rock” at the Yonaguni Underwater Ruins—one of the most popular dive sites in the area.
This spot is known as “Two-Layer Rock” at the Yonaguni Underwater Ruins—one of the most popular dive sites in the area.

Kihachiro Aratake, a local scuba diver and tour operator, discovered the Yonaguni Monument in 1986. The monument is just 100 meters off the coast, and the site features massive stone formations that resemble ancient architecture, with structures that appear to include terraces, straight edges, and right angles. While still shrouded in mystery, it has been suggested that the site could be part of a larger submerged complex. Thus, Yonaguni is a popular destination for divers, researchers, and tourists alike, drawn by its unusual and enigmatic features today.

This rock is called a giant turtle monument, a sharp carved rock looking like a turtle seen from above.
This rock is called a giant turtle monument, a sharp carved rock looking like a turtle seen from above.

The monument is reachable by a shallow dive at just 10 to 15 meters. It is accessible for divers of all levels. However, the area can be subject to strong currents, so a certain level of experience is required to explore the site safely.

If diving isn’t your thing, you can still enjoy the monument by taking a glass-bottom boat tour, which runs once a day, and it offers a unique perspective of this enigmatic underwater wonder.

Is Yonaguni’s monument a gateway to an ancient past—or simply an awe-inspiring natural wonder? Dive in or take a boat tour and decide for yourself!

This area is known as the Main Terrace of the Yonaguni Submarine Ruins. The monolith is said to measure approximately 290 meters long, 120 meters wide, and 26 meters high. Its appearance and scale are often compared to Shuri Castle in Naha, on Okinawa’s main island.
This area is known as the Main Terrace of the Yonaguni Submarine Ruins. The monolith is said to measure approximately 290 meters long, 120 meters wide, and 26 meters high. Its appearance and scale are often compared to Shuri Castle in Naha, on Okinawa’s main island.

Where is Yonaguni Island?

With a population of approximately 1,670 people, Yonaguni is home to both locals and military personnel due to the island’s strategic importance in international relations. Although Yonaguni is part of Okinawa Prefecture, it lies about 509 km away from Okinawa’s main island. Interestingly, the nearest island is Taiwan, which is only 111 km away. The second is Ishigaki Island at 119 km.

This area is known as the Main Terrace of the Yonaguni Submarine Ruins. The monolith is said to measure approximately 290 meters long, 120 meters wide, and 26 meters high. Its appearance and scale are often compared to Shuri Castle in Naha, on Okinawa’s main island.
This area is known as the Main Terrace of the Yonaguni Submarine Ruins. The monolith is said to measure approximately 290 meters long, 120 meters wide, and 26 meters high. Its appearance and scale are often compared to Shuri Castle in Naha, on Okinawa’s main island.

Please be aware that in Yonaguni, cash is still the primary payment method—credit cards and QR code payments are not accepted. While some dive shops and accommodations accept credit cards, most restaurants and local grocery stores are cash-only. Be ready to withdraw enough bills before landing the island since only the Japan Post Branch is available in Yonaguni.

Fresh fish—especially Kajiki (marlin)—is a local favorite in Yonaguni. Most restaurants serve it as sashimi, fried, or in a variety of small appetizers.
Fresh fish—especially Kajiki (marlin)—is a local favorite in Yonaguni. Most restaurants serve it as sashimi, fried, or in a variety of small appetizers.

After a thrilling dive, it's time to enjoy some local cuisine! Lunchtime is casual — just go and wait for your turn. As long as the restaurant is open, they’ll serve you delicious dishes. However, dinner is a different story. With limited restaurants available, many require reservations in advance. Some places even only serve lunch, so you may find yourself searching for food if you don’t plan ahead.

Known as Battleship Rock, this monument gets its name from its striking resemblance to a warship.
Known as Battleship Rock, this monument gets its name from its striking resemblance to a warship.

There is no direct flight from Tokyo to Yonaguni. Indeed, it’s not super easy to travel over if you live in Tokyo like me. Yet, it’s worth a visit if you are a history and travel lover!

Traveling from Tokyo, there are several options, depending on your budget and time availability. Here are the routes to consider:

  • From Tokyo (Haneda or Narita) to Naha (Okinawa’s main island): The flight takes approximately 2 hours and 30 minutes, with departures available from 6:25 am to 8:05 pm. Once you arrive in Naha, you will need to transfer to Yonaguni. There are only two daily flights from Naha to Yonaguni, at 7:15 am and 2:50 pm.

  • From Tokyo (Haneda or Narita) to Ishigaki: There are 5 flights available daily, from 6:45 am to 2:35 pm, with a travel time of approximately 3 hours and 10 minutes. After arriving in Ishigaki, you can take one of three daily flights from Ishigaki to Yonaguni: 10:05 am, 12:40 pm, or 5:50 pm. The flight between Ishigaki and Yonaguni is only 30 minutes.

  • Ferry from Ishigaki to Yonaguni: For those seeking a more scenic journey, a ferry service operates between Ishigaki and Yonaguni. The Ferry Yonakuni takes about 4 hours, with services running twice a week: Tuesdays and Fridays from Ishigaki to Yonaguni, and Wednesdays and Saturdays from Yonaguni to Ishigaki. The ferry departs at 10:00 am on these days, so you'll need to adjust your schedule accordingly.

While the ferry is equipped with comfortable sofa-like seats, vending machines, and berths for rest, it’s important to note that the journey can be rough. The ferry route passes through areas with strong currents, which may cause seasickness for some passengers. In fact, locals have nicknamed the ship “Gero-sen,” or "vomit ship," due to the occasional rough seas during the 4-hour trip. Be sure to check the official ferry website for any changes to the schedule, as it may be affected by weather conditions.

The ferry, relatively large and equipped to carry vehicles at the back, offers ample space for both passengers and cargo. However, the severe weather and strong currents often cause seasickness among riders. The bathroom even has a special sink for those who need to puke.
The ferry, relatively large and equipped to carry vehicles at the back, offers ample space for both passengers and cargo. However, the severe weather and strong currents often cause seasickness among riders. The bathroom even has a special sink for those who need to puke.

交通方式

1. From Tokyo to Yonaguni: While there are no direct flights from Tokyo to Yonaguni, you can travel via Okinawa or Ishigaki.

  • Option 1: Tokyo (Haneda or Narita) to Naha (Okinawa's main island)

    • Flight time: 2 hours 30 minutes

    • Frequency: Several daily flights (from 6:25 am to 8:05 pm)

    • After arriving in Naha, transfer to Yonaguni via a connecting flight (see below).

  • Option 2: Tokyo (Haneda or Narita) to Ishigaki (near Yonaguni)

    • Flight time: 3 hours 10 minutes

    • Frequency: 5 daily flights (from 6:45 am to 2:35 pm)

    • From Ishigaki, you can take a direct flight to Yonaguni (see below).

2. From Osaka (Kansai) to Yonaguni:

  • Flight from Osaka (Kansai Airport) to Naha (Okinawa)

    • Flight time: 2 hours 30 minutes

    • Frequency: Several daily flights (similar to Tokyo's flight schedule)

    • After arriving in Naha, transfer to Yonaguni via a connecting flight to Yonaguni.

3. From Okinawa (Naha) to Yonaguni:

  • Flight from Naha to Yonaguni:

    • Flight time: 1 hour

    • Frequency: Two flights per day (7:15 am and 2:50 pm)

    • Operated by Japan Transocean Air (JTA).

4. From Ishigaki to Yonaguni:

  • Flight from Ishigaki to Yonaguni:

    • Flight time: 30 minutes

    • Frequency: Three flights per day (10:05 am, 12:40 pm, and 5:50 pm)

  • Ferry from Ishigaki to Yonaguni:

    • Ferry name: "Ferry Yonakuni"

    • Travel time: 4 hours

    • Frequency: Twice a week (Tuesdays and Fridays from Ishigaki to Yonaguni; Wednesdays and Saturdays from Yonaguni to Ishigaki)

    • Departure time: 10:00 am

5. Getting Around Yonaguni:

Make sure to arrange accommodation with a pick-up service or rent a car in advance. Rental cars are available near the airport, but booking ahead is recommended to ensure availability. While public transportation is minimal, the Yonaguni Life-Line Bus (a free mini bus) operates around the island, and its ocean-blue color makes it easy to spot.

Cycling or renting a motorbike is also a great way to explore Yonaguni. If you decide to cycle, be aware that the island has steep hills, but most rental bikes are equipped with electric motors, making the ride easier.

Emi Takahata

Emi Takahata @takahata.emi

A freelance travel journalist as well as a former producer/host of her Japanese radio show at 105.9FM the region in Canada. She contributes an interesting story that's happening in Japan.